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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_6521951_6523053_F

Intron Information:

Intron Rank:
32
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6521951 - 6523053
Intron Length:
1103

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGTGCTCC
5'SS Class:
major
3'SS Sequence:
TCTTTGTCAGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGACAT
U12 Branch Point Sequence:
TCTCGATTGACA
Flanking Amino Acid:
CTPSSEQEEEEEVANLASRR
Intron Amino Acid Position:
1782

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1
64.5
36.3
Major BPS
67.6
0.44
1.2
75
40
Major PPT
73.6
0.53
0.9
70.7
34.8
Minor 5ss
45.8
-0.4
2.7
59.5
45.4
Minor BPS
48.9
-0
2.1
65.15
41.1

Associated Gene:

Gene:
UNC80
Ensembl Gene ID:
ENSAPLG00000005783
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005983
6452528 - 6570138
117611