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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_6532685_6534416_F

Intron Information:

Intron Rank:
42
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6532685 - 6534416
Intron Length:
1732

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCCAT
5'SS Class:
strong_major
3'SS Sequence:
TATATTTTCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
ACTTTCATGACA
Flanking Amino Acid:
YQWVLPSMLQVYADYESNPQ
Intron Amino Acid Position:
2243

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.83
0.9
74
38.4
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
82.7
0.73
0.8
80.9
36.2
Minor 5ss
34.1
-1.8
3.2
46.7
48.6
Minor BPS
59.3
0.29
1.6
69.06
37

Associated Gene:

Gene:
UNC80
Ensembl Gene ID:
ENSAPLG00000005783
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005998
6452528 - 6570138
117611
ENSAPLT00000005983
6452528 - 6570138
117611