Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_6538047_6538259_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6538047 - 6538259

Intron Length:

213

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAACTTGC

5'SS Class:

strong_major

3'SS Sequence:

TTCCCTTTGCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TACTCAC

U12 Branch Point Sequence:

TGTTACTCACCT

Flanking Amino Acid:

ALLYSVEVLTRPMTAPQMSR

Intron Amino Acid Position:

2423

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.4

0.74

1.1

73.2

39.3

Major BPS

77.2

0.68

0.8

77.6

26.2

Major PPT

77.5

0.62

0.9

72.3

37.8

Minor 5ss

46.1

-0.4

2.6

62.1

42.6

Minor BPS

0.2

78.41

43.2

Associated Gene:

Gene:

UNC80

Ensembl Gene ID:

ENSAPLG00000005783

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005998

6452528 - 6570138

117611

ENSAPLT00000005983

6452528 - 6570138

117611