Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_6547788_6550093_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6547788 - 6550093

Intron Length:

2306

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTGAGTAGC

5'SS Class:

strong_major

3'SS Sequence:

GTTTGTATTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTGTAT

U12 Branch Point Sequence:

TCTGTTTGTATT

Flanking Amino Acid:

RSLINVCVNLVMGVVGPSSV

Intron Amino Acid Position:

2648

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.7

0.79

0.9

36.6

Major BPS

71.5

0.53

1.4

71.7

44.6

Major PPT

80.5

0.69

0.9

74.1

40.3

Minor 5ss

30.8

-2.2

2.6

33.6

35.6

Minor BPS

45.7

-0.2

1.8

63.05

42.5

Associated Gene:

Gene:

UNC80

Ensembl Gene ID:

ENSAPLG00000005783

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005998

6452528 - 6570138

117611

ENSAPLT00000005983

6452528 - 6570138

117611