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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_6619740_6633431_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6619740 - 6633431
Intron Length:
13692

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGC|GTAAGTGTT
5'SS Class:
major
3'SS Sequence:
TTTGTCTTCACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TATTTTTGGACT
Flanking Amino Acid:
DEQTVRTTVEASYTSEWKWL
Intron Amino Acid Position:
375

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1.3
76.2
39.9
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
85
0.79
0.8
80
32.1
Minor 5ss
39.6
-1.2
3.4
53.7
43.8
Minor BPS
63.8
0.52
1.4
80.03
35.7

Associated Gene:

Gene:
KANSL1L
Ensembl Gene ID:
ENSAPLG00000005351
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005550
6594742 - 6637349
42608