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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_6640147_6641838_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6640147 - 6641838
Intron Length:
1692

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTGTA
5'SS Class:
strong_major
3'SS Sequence:
CCCCTATCCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TTTCCCCTATCC
Flanking Amino Acid:
WGYMWEYPIAKAFVDARVQP
Intron Amino Acid Position:
401

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
84.3
26.3
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
71.7
0.49
0.8
68.7
30.5
Minor 5ss
38
-1.4
3.3
49.4
41.3
Minor BPS
59.2
0.27
2
77.14
38.6

Associated Gene:

Gene:
ACADL
Ensembl Gene ID:
ENSAPLG00000004832
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005026
6640053 - 6655780
15728