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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_6641926_6644161_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6641926 - 6644161
Intron Length:
2236

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTATGTGGT
5'SS Class:
major
3'SS Sequence:
TTGATCATTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTCTTTTTGATC
Flanking Amino Acid:
DSSTASMAKYWSSDLQNSVA
Intron Amino Acid Position:
372

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
70.6
39.7
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
66.5
0.37
1.1
69.3
40.7
Minor 5ss
40.6
-1
3.2
55
44.5
Minor BPS
67.2
0.52
1.1
72.08
33.7

Associated Gene:

Gene:
ACADL
Ensembl Gene ID:
ENSAPLG00000004832
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005026
6640053 - 6655780
15728