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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_6644290_6646327_R

Intron Information:

Intron Rank:
8
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
6644290 - 6646327
Intron Length:
2038

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
CTCCCAAAATAAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
GCCTTAT
U12 Branch Point Sequence:
TCTGCCTTATCC
Flanking Amino Acid:
AFGKTIAHLQTVQHKLAEMK
Intron Amino Acid Position:
330

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.9
1.04
0.7
89.2
17.6
Major BPS
61.1
0.28
1.3
53.6
43.8
Major PPT
48.9
-0
1.1
51.2
35
Minor 5ss
38.3
-1.3
2.9
49
47.2
Minor BPS
65.6
0.47
1.7
73.85
43.3

Associated Gene:

Gene:
ACADL
Ensembl Gene ID:
ENSAPLG00000004832
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005026
6640053 - 6655780
15728