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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_6649674_6650626_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6649674 - 6650626
Intron Length:
953

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCTAA
5'SS Class:
strong_major
3'SS Sequence:
AATTTCGTTCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
ACCTTTTGAATT
Flanking Amino Acid:
AIAMTEPGAGSDLQGVRTYA
Intron Amino Acid Position:
180

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.8
80.2
30.6
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
72
0.5
1
63.1
43.2
Minor 5ss
43.2
-0.8
2.9
55.3
48.9
Minor BPS
55.5
0.25
1.4
65.89
39.8

Associated Gene:

Gene:
ACADL
Ensembl Gene ID:
ENSAPLG00000004832
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005026
6640053 - 6655780
15728