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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_665874_668008_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
665874 - 668008
Intron Length:
2135

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TCTGTTTTGACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
TCTGTTTTGACA
Flanking Amino Acid:
HVVTLKIQLQSCSKLEDLPA
Intron Amino Acid Position:
137

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
81.3
32.8
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
78.7
0.64
1
75.5
38.3
Minor 5ss
31.8
-2.1
3.6
48.2
47.9
Minor BPS
62.2
0.38
1.4
68.82
38.3

Associated Gene:

Gene:
SATB2
Ensembl Gene ID:
ENSAPLG00000008131
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008446
611837 - 740028
128192