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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_6666671_6668091_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6666671 - 6668091
Intron Length:
1421

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAGGTGTG
5'SS Class:
major
3'SS Sequence:
CATTCCTTCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
TCAAGTTCAACT
Flanking Amino Acid:
EDSNGCINYEEQVKFGKTRW
Intron Amino Acid Position:
84

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.4
0.62
1.1
67.1
44.6
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
73.5
0.53
0.8
65.7
35.6
Minor 5ss
34.5
-1.8
3.5
39.9
46.1
Minor BPS
47.7
-0
2
65.55
45

Associated Gene:

Gene:
MYL1
Ensembl Gene ID:
ENSAPLG00000004615
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042657
6666402 - 6674536
8135