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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_668133_672939_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
668133 - 672939
Intron Length:
4807

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TCTGTATTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTCTGTATTT
Flanking Amino Acid:
TLAKECPLSQSMISSIVNST
Intron Amino Acid Position:
179

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
1.2
85.2
32.2
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
82.2
0.72
0.9
73.4
41
Minor 5ss
34
-1.8
3.3
49.7
46.6
Minor BPS
56.4
0.28
2.2
83.14
39

Associated Gene:

Gene:
SATB2
Ensembl Gene ID:
ENSAPLG00000008131
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008446
611837 - 740028
128192