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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_6705095_6705380_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6705095 - 6705380
Intron Length:
286

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAGCC
5'SS Class:
strong_major
3'SS Sequence:
CCTCTTTTCCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
GAAAATTTATAT
Flanking Amino Acid:
NMKYLYRACKFAEWCLSYGQ
Intron Amino Acid Position:
352

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.8
72.1
31.2
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
82.6
0.73
0.7
75.5
32.9
Minor 5ss
26.3
-2.7
3.1
33.4
42
Minor BPS
43.2
-0.4
1.8
54.39
40.2

Associated Gene:

Gene:
LANCL1
Ensembl Gene ID:
ENSAPLG00000004144
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004279
6703365 - 6720819
17455