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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_6705558_6706044_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6705558 - 6706044
Intron Length:
487

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACCGGAA
5'SS Class:
major
3'SS Sequence:
TGTGTCTCTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGGAAAT
U12 Branch Point Sequence:
TGTGTCTCTACA
Flanking Amino Acid:
VIYMLLQAYKVFGEQQYLND
Intron Amino Acid Position:
293

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.7
0.4
1.2
60.4
40.6
Major BPS
47.3
-0.1
1.3
50.8
41.5
Major PPT
79.9
0.67
0.9
73
37.4
Minor 5ss
33
-1.9
3.7
46.3
49
Minor BPS
48.5
-0.1
2
63.85
42.2

Associated Gene:

Gene:
LANCL1
Ensembl Gene ID:
ENSAPLG00000004144
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004279
6703365 - 6720819
17455