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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_6706228_6707922_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6706228 - 6707922
Intron Length:
1695

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGGC
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTCTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAC
U12 Branch Point Sequence:
GTTTCCCGGATT
Flanking Amino Acid:
LAGIYYYLMQPGLGVSQVKL
Intron Amino Acid Position:
232

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.3
0.93
0.8
73.3
36.4
Major BPS
80.9
0.77
0.8
81.7
25.4
Major PPT
85.9
0.81
0.6
85
22.5
Minor 5ss
30.8
-2.2
3.3
41.8
45
Minor BPS
55.1
0.24
1.8
77.79
38.3

Associated Gene:

Gene:
LANCL1
Ensembl Gene ID:
ENSAPLG00000004144
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004279
6703365 - 6720819
17455