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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_6750252_6754337_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6750252 - 6754337
Intron Length:
4086

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGGCAA
5'SS Class:
major
3'SS Sequence:
CTTCTTCACCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAC
U12 Branch Point Sequence:
CCTTCTTCACCT
Flanking Amino Acid:
GEVVFNTGISGYTEALTDPS
Intron Amino Acid Position:
24

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
65.8
41.7
Major BPS
77.5
0.68
1
79.6
33
Major PPT
72.4
0.51
0.8
66.2
34.8
Minor 5ss
29.6
-2.3
3.2
30.1
43
Minor BPS
53.2
0.18
1.9
71.32
46.1

Associated Gene:

Gene:
CPS1
Ensembl Gene ID:
ENSAPLG00000002474
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002584
6750181 - 6837205
87025