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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_6764398_6764768_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6764398 - 6764768
Intron Length:
371

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAGCAG
5'SS Class:
major
3'SS Sequence:
CTTTCTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTGAC
U12 Branch Point Sequence:
TGTTCTCTGACC
Flanking Amino Acid:
ATSYKMQMANRGQNQPVLNA
Intron Amino Acid Position:
261

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.2
0.43
1.1
54
44.7
Major BPS
69.1
0.47
1
60.7
37.6
Major PPT
90.4
0.91
0.6
88.5
21
Minor 5ss
28.4
-2.5
3.5
37.7
47.1
Minor BPS
63.7
0.41
1.6
75.43
34.8

Associated Gene:

Gene:
CPS1
Ensembl Gene ID:
ENSAPLG00000002474
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002584
6750181 - 6837205
87025