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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_6767143_6768546_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6767143 - 6768546
Intron Length:
1404

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATTGTAT
5'SS Class:
major
3'SS Sequence:
TTATTTTTCCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
ATGTGTTTATTT
Flanking Amino Acid:
DANPGPTDTEFLFDSFISLV
Intron Amino Acid Position:
335

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.4
0.55
1
70.2
36.1
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
82.7
0.74
0.8
77.3
36.7
Minor 5ss
44.6
-0.6
3.2
64.1
47.4
Minor BPS
49.6
0.05
2
69.42
42.6

Associated Gene:

Gene:
CPS1
Ensembl Gene ID:
ENSAPLG00000002474
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002584
6750181 - 6837205
87025