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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_6774760_6777334_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6774760 - 6777334
Intron Length:
2575

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
AACCTATTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTTTTTTTAACC
Flanking Amino Acid:
EESLLDLGTKAFAMTNQILV
Intron Amino Acid Position:
559

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.8
1.06
0.8
81.8
38.5
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
63.9
0.31
0.9
54.9
39.5
Minor 5ss
37.8
-1.4
3
49.5
46.7
Minor BPS
85.8
1.1
0.9
89.58
24.4

Associated Gene:

Gene:
CPS1
Ensembl Gene ID:
ENSAPLG00000002474
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002584
6750181 - 6837205
87025