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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_6831142_6835786_F

Intron Information:

Intron Rank:
33
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6831142 - 6835786
Intron Length:
4645

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTCCT
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
CTTTATCTAATT
Flanking Amino Acid:
PKKGILIGIQKSFRPKFLSV
Intron Amino Acid Position:
1314

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.83
0.9
77.3
37.6
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
93.2
0.97
0.6
92.1
18.5
Minor 5ss
36.9
-1.5
2.9
51.8
44.6
Minor BPS
56.1
0.27
1.9
77.26
39.6

Associated Gene:

Gene:
CPS1
Ensembl Gene ID:
ENSAPLG00000002474
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002584
6750181 - 6837205
87025