About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_6835847_6836809_F

Intron Information:

Intron Rank:
34
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6835847 - 6836809
Intron Length:
963

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGTGGT
5'SS Class:
strong_major
3'SS Sequence:
TTTCCCTCAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTATTAT
U12 Branch Point Sequence:
TTTCCCTCAACA
Flanking Amino Acid:
AELLCEEGFELYATEATSDW
Intron Amino Acid Position:
1334

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
1
76.2
39.9
Major BPS
67
0.42
1.3
60.1
46.3
Major PPT
78.2
0.63
0.8
74
29.6
Minor 5ss
33
-1.9
3.5
49.2
47.1
Minor BPS
76.3
0.82
1.5
85.78
32.8

Associated Gene:

Gene:
CPS1
Ensembl Gene ID:
ENSAPLG00000002474
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002584
6750181 - 6837205
87025