About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_6836923_6836994_F

Intron Information:

Intron Rank:
35
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
6836923 - 6836994
Intron Length:
72

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAGCA
5'SS Class:
strong_major
3'SS Sequence:
GGCAGATTTCTAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTAACAT
U12 Branch Point Sequence:
ACATCCAGGATA
Flanking Amino Acid:
SQNPSLPSVRSLVGITNSDL
Intron Amino Acid Position:
1371

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.6
0.96
0.8
77.8
30
Major BPS
71
0.52
1.1
77.7
35.3
Major PPT
58.5
0.19
1
47
45
Minor 5ss
30.7
-2.2
3.3
39.5
45.9
Minor BPS
46.7
-0.2
1.7
54.98
37.4

Associated Gene:

Gene:
CPS1
Ensembl Gene ID:
ENSAPLG00000002474
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002584
6750181 - 6837205
87025