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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_6837096_6837137_F

Intron Information:

Intron Rank:
36
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6837096 - 6837137
Intron Length:
42

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTAATTAAC
5'SS Class:
major
3'SS Sequence:
CTATTTAATACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TCCTATTTAATA
Flanking Amino Acid:
PRIATAGRFYSWMYSSTLCF
Intron Amino Acid Position:
1405

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.8
0.37
1.2
67.6
37.5
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
75.4
0.57
1
70
39.2
Minor 5ss
39
-1.2
2.8
55.8
41.5
Minor BPS
63
0.4
1.5
67.44
39.9

Associated Gene:

Gene:
CPS1
Ensembl Gene ID:
ENSAPLG00000002474
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002584
6750181 - 6837205
87025