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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_686599_700555_F

Intron Information:

Intron Rank:
6
Intron Class:
minor-like
Intron Phase:
0
Intron Coordinates:
686599 - 700555
Intron Length:
13957

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATCCATT
5'SS Class:
weak_minor
3'SS Sequence:
TTTTTTTAACCAG|G
3'SS Class:
strong_BPS
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTTTTTTTAACC
Flanking Amino Acid:
FARVAFNRTQGLLSEILRKE
Intron Amino Acid Position:
371

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.5
0.51
1.2
74.4
41.9
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
82.9
0.74
0.9
78.8
38.7
Minor 5ss
74.3
0.82
1.9
83.7
34.7
Minor BPS
85.8
1.1
0.9
89.58
24.4

Associated Gene:

Gene:
SATB2
Ensembl Gene ID:
ENSAPLG00000008131
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008446
611837 - 740028
128192