About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_6884210_6885098_F

Intron Information:

Intron Rank:
147304
Intron Class:
major
Intron Phase:
Intron Coordinates:
6884210 - 6885098
Intron Length:
889

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCAGA
5'SS Class:
strong_major
3'SS Sequence:
TATTAAAACACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
TGCATATTAAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.5
0.93
0.9
78
38.6
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
63.4
0.3
1
56.1
42.3
Minor 5ss
38.7
-1.3
2.8
49.1
46.7
Minor BPS
48.9
-0
1.7
59.2
39.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029336
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046214
6883564 - 6913772
30209