Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_6885161_6886284_F

Intron Information:

Intron Rank:

147305

Intron Class:

major

Intron Phase:

Intron Coordinates:

6885161 - 6886284

Intron Length:

1124

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAGTTTC

5'SS Class:

strong_major

3'SS Sequence:

TTTTGTGTTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCTCAG

U12 Branch Point Sequence:

TTTCCCAGCACT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

97.7

1.12

0.6

91.3

19.2

Major BPS

0.52

1.5

79.6

35.6

Major PPT

85.8

0.81

0.9

80.6

Minor 5ss

44.8

-0.6

2.8

61.1

43.8

Minor BPS

49.5

0.04

2.2

79.85

41.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000029336

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000046214

6883564 - 6913772

30209