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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_6886449_6940578_F

Intron Information:

Intron Rank:
147303
Intron Class:
major
Intron Phase:
Intron Coordinates:
6886449 - 6940578
Intron Length:
54130

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGATAA
5'SS Class:
strong_major
3'SS Sequence:
CTTCCTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTTAG
U12 Branch Point Sequence:
TGGCACTTAGCA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.9
0.89
0.8
79.1
24.3
Major BPS
48.9
-0
1.5
47
38.5
Major PPT
85.9
0.81
0.7
80.4
24.8
Minor 5ss
31.8
-2.1
3
37.8
47
Minor BPS
51.3
0.04
1.8
63.14
42.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029336
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044537
6885580 - 6940819
55240