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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_70438_71594_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
70438 - 71594
Intron Length:
1157

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTTTCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
TTATGGTTACCA
Flanking Amino Acid:
ENREGTIEDGNALKRVFEWL
Intron Amino Acid Position:
245

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
93.7
19.8
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
86.8
0.83
0.7
80.1
31.9
Minor 5ss
43.4
-0.7
2.9
60.8
37.6
Minor BPS
46.6
-0.2
2.6
67.7
44.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015210
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015856
69219 - 75666
6448