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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_75117_75355_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
75117 - 75355
Intron Length:
239

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCACA
5'SS Class:
strong_major
3'SS Sequence:
CCTTTATTGCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
CTATCCTTTATT
Flanking Amino Acid:
IPGRAKVSTYRQLLYGIAED
Intron Amino Acid Position:
104

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.8
80.7
33.8
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
75.2
0.57
1
69.1
40.9
Minor 5ss
39.7
-1.2
2.8
49.8
46.2
Minor BPS
68.6
0.67
1.6
80.61
41.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015210
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015856
69219 - 75666
6448