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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_7681945_7687875_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7681945 - 7687875
Intron Length:
5931

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGCTTG
5'SS Class:
strong_major
3'SS Sequence:
TCTTGTCCCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TTCTCACTGATT
Flanking Amino Acid:
RKSSTPQKFVGEKLMRFGYP
Intron Amino Acid Position:
286

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.72
1
69.7
43.7
Major BPS
85
0.87
0.8
85.6
23
Major PPT
75.5
0.57
0.8
73.9
31.3
Minor 5ss
47
-0.3
2.8
56.3
47.9
Minor BPS
52.9
0.17
2
77.09
39.5

Associated Gene:

Gene:
IKZF2
Ensembl Gene ID:
ENSAPLG00000001291
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001311
7681220 - 7784894
103675