About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_7695577_7719121_R


Intron Information:

Intron Rank:
4

Intron Class:
major

Intron Phase:
1

Intron Coordinates:
7695577 - 7719121

Intron Length:
23545

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
CCG|GTGAGCCCA

5'SS Class:
major

3'SS Sequence:
GTTCTTTCCACAG|T

3'SS Class:
strong_PPT

U2 Branch Point Sequence:
ATTTGAC

U12 Branch Point Sequence:
TTGACCTGAAGC

Flanking Amino Acid:
ALTGHLRTHSVGKPHKCNYC

Intron Amino Acid Position:
192

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
74
0.57
1
58.9
41.8

Major BPS
77.7
0.69
0.9
69.1
37.9

Major PPT
81.4
0.71
0.8
76.1
32.5

Minor 5ss
33.2
-1.9
3
40.8
45

Minor BPS
56.2
0.17
1.8
68.12
43.1

Associated Gene:

Gene:
IKZF2

Ensembl Gene ID:

Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

7681220 - 7784894
103675