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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_7719290_7729381_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7719290 - 7729381
Intron Length:
10092

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGCAGC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTGAC
U12 Branch Point Sequence:
CGTTTCTTGACA
Flanking Amino Acid:
VLMVHKRSHTGERPFHCNQC
Intron Amino Acid Position:
136

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.74
1
68.8
42.2
Major BPS
73.9
0.59
1
65.3
41.6
Major PPT
89.5
0.89
0.6
81.6
30.4
Minor 5ss
39.9
-1.1
2.9
49
41.5
Minor BPS
72.5
0.7
1.2
74.54
37

Associated Gene:

Gene:
IKZF2
Ensembl Gene ID:
ENSAPLG00000001291
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001311
7681220 - 7784894
103675