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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_7729649_7784014_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7729649 - 7784014
Intron Length:
54366

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAAGTCTC
5'SS Class:
major
3'SS Sequence:
TGTTTTATTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTATTTTTATTT
Flanking Amino Acid:
QHTSPSHMASTNSVKLEMQS
Intron Amino Acid Position:
47

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1
70.3
40.5
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
87.7
0.85
0.8
85.7
33.4
Minor 5ss
41
-1
3
59.3
39
Minor BPS
64.7
0.54
1.5
79.8
36.8

Associated Gene:

Gene:
IKZF2
Ensembl Gene ID:
ENSAPLG00000001291
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001311
7681220 - 7784894
103675