Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_7763_8164_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

7763 - 8164

Intron Length:

402

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGTTTA

5'SS Class:

strong_major

3'SS Sequence:

TTCTTTTTTCTAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GATTTAT

U12 Branch Point Sequence:

TTTTCTTTTTTC

Flanking Amino Acid:

SLLSHTFFKQIKEQTQSSLL

Intron Amino Acid Position:

367

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

93.9

1.04

0.7

89.2

17.6

Major BPS

70.9

0.52

1.2

63.7

43.9

Major PPT

89.9

0.9

0.6

84.5

30.4

Minor 5ss

38.3

-1.3

2.9

47.2

Minor BPS

44.9

-0.4

3.6

73.85

37.7

Associated Gene:

Gene:

STRADB

Ensembl Gene ID:

ENSAPLG00000014653

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000048196

7561 - 14454

6894

ENSAPLT00000015296

7561 - 14454

6894