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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_7833976_7834348_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7833976 - 7834348
Intron Length:
373

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATTGAC
5'SS Class:
strong_major
3'SS Sequence:
TCACGTCATTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
CTTACTTTAAAT
Flanking Amino Acid:
YCKDDYQYEEVPADDEFSLQ
Intron Amino Acid Position:
31

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.9
77.7
30.4
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
65.4
0.35
0.9
62.7
38.5
Minor 5ss
33
-1.9
3.2
43.5
44.2
Minor BPS
69.6
0.69
1.4
81.86
39.5

Associated Gene:

Gene:
SPAG16
Ensembl Gene ID:
ENSAPLG00000015934
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016623
7830019 - 8217436
387418