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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_7845490_7850196_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7845490 - 7850196
Intron Length:
4707

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTATGTTAC
5'SS Class:
major
3'SS Sequence:
TGTTTACATGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TTCTGTTTACAT
Flanking Amino Acid:
KDLDSYKLAANKAKEAFLKM
Intron Amino Acid Position:
152

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1
73.9
30.9
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
72.8
0.51
0.9
67.8
38.2
Minor 5ss
48.3
-0.1
2.4
60.9
38.3
Minor BPS
49.1
0.01
2.1
72.3
45

Associated Gene:

Gene:
SPAG16
Ensembl Gene ID:
ENSAPLG00000015934
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016623
7830019 - 8217436
387418