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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_7857595_7890476_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7857595 - 7890476
Intron Length:
32882

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGCAAC
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTTCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TAATTAATAATT
Flanking Amino Acid:
SEKTGKRYPKDSEFPVDSHA
Intron Amino Acid Position:
299

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
1
74
36.6
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
89.1
0.88
0.7
81.8
35.3
Minor 5ss
45.8
-0.4
2.6
59.7
45.1
Minor BPS
51.2
0.12
1.8
72.2
38.2

Associated Gene:

Gene:
SPAG16
Ensembl Gene ID:
ENSAPLG00000015934
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016623
7830019 - 8217436
387418