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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_788943_789461_F

Intron Information:

Intron Rank:
124286
Intron Class:
major
Intron Phase:
Intron Coordinates:
788943 - 789461
Intron Length:
519

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGAGAA
5'SS Class:
major
3'SS Sequence:
CACTCTTCTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAC
U12 Branch Point Sequence:
ATGTCTGAAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
73.4
30.6
Major BPS
81.3
0.78
0.8
83.4
26.1
Major PPT
79.6
0.67
0.8
76.7
31.5
Minor 5ss
32.2
-2
3.4
42.7
44.5
Minor BPS
45.4
-0.2
2.3
66.92
44.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017007
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028230
749565 - 789570
40006