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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_790816_791030_F

Intron Information:

Intron Rank:
140411
Intron Class:
major
Intron Phase:
Intron Coordinates:
790816 - 791030
Intron Length:
215

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGATGC
5'SS Class:
strong_major
3'SS Sequence:
TGATTCTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTGAT
U12 Branch Point Sequence:
TTGTCTCTGATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
66.9
40
Major BPS
79
0.72
1
69
38.9
Major PPT
83.7
0.76
0.8
81.2
36.2
Minor 5ss
37.8
-1.4
3
42.6
44.5
Minor BPS
61
0.43
1.6
79.25
37.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025552
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037846
790323 - 802099
11777