About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_8026317_8045499_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8026317 - 8045499
Intron Length:
19183

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TTCCTTGCAACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TTTTTCTAAACT
Flanking Amino Acid:
DWLSGCCFHPSGTQLVTSSG
Intron Amino Acid Position:
390

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
1.1
76.2
32.9
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
73.2
0.52
0.9
69.2
35.7
Minor 5ss
29.3
-2.4
2.9
33.7
41.5
Minor BPS
78.9
0.99
1.5
95.32
31.5

Associated Gene:

Gene:
SPAG16
Ensembl Gene ID:
ENSAPLG00000015934
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016623
7830019 - 8217436
387418