About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_8045686_8071078_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8045686 - 8071078
Intron Length:
25393

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGACT
5'SS Class:
strong_major
3'SS Sequence:
TATTCTTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTGAA
U12 Branch Point Sequence:
ATTCCTGTTATT
Flanking Amino Acid:
DSTSKIWDVNSERCRYTLRG
Intron Amino Acid Position:
452

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
77.8
36.4
Major BPS
69.6
0.49
1
59.5
39
Major PPT
89.5
0.89
0.7
84.7
29.6
Minor 5ss
41
-1
3.1
58.1
46.3
Minor BPS
47.2
-0.1
2.2
71.23
39.9

Associated Gene:

Gene:
SPAG16
Ensembl Gene ID:
ENSAPLG00000015934
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016623
7830019 - 8217436
387418