About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_82198_82928_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
82198 - 82928
Intron Length:
731

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTTCC
5'SS Class:
strong_major
3'SS Sequence:
TTATTAATTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
CTTTTATTAATT
Flanking Amino Acid:
QERKGSYKDAEELKRVFTWL
Intron Amino Acid Position:
317

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
77.6
31.4
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
80.7
0.69
0.9
74.4
39
Minor 5ss
41.6
-0.9
2.7
51
39.8
Minor BPS
69.9
0.7
1.6
84.39
36.6

Associated Gene:

Gene:
CASP10
Ensembl Gene ID:
ENSAPLG00000015244
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015891
80288 - 89355
9068