Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_8280367_8281320_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

8280367 - 8281320

Intron Length:

954

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATGTAGT

5'SS Class:

strong_major

3'SS Sequence:

ATCTTTTTCCTAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTTTTAT

U12 Branch Point Sequence:

TGTGCTTTTATT

Flanking Amino Acid:

ARRCTEFNSTVTHLVIPDVP

Intron Amino Acid Position:

617

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.2

0.92

0.8

83.5

35.1

Major BPS

84.1

0.85

0.9

75.3

39.4

Major PPT

79.4

0.66

0.8

73.2

36.6

Minor 5ss

43.5

-0.7

2.6

60.2

44.3

Minor BPS

58.9

0.36

1.7

76.14

40.9

Associated Gene:

Gene:

BARD1

Ensembl Gene ID:

ENSAPLG00000015564

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000016244

8268772 - 8311536

42765