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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_8281457_8282919_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8281457 - 8282919
Intron Length:
1463

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTCATGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TCAGCTTTACAT
Flanking Amino Acid:
ESFSLSQLSESQSTSQARDG
Intron Amino Acid Position:
572

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
98.4
1.14
0.6
94.3
17.7
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
81.8
0.71
0.8
77.3
30.3
Minor 5ss
38.6
-1.3
3.4
57.8
46.8
Minor BPS
49.1
0.01
1.8
65.31
45.4

Associated Gene:

Gene:
BARD1
Ensembl Gene ID:
ENSAPLG00000015564
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016244
8268772 - 8311536
42765