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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_8283029_8290596_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8283029 - 8290596
Intron Length:
7568

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTAAGTAGA
5'SS Class:
major
3'SS Sequence:
CTTGTTTTGCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
ATTTACTTAAAC
Flanking Amino Acid:
LLLHGASRDAVNIFGLRPVD
Intron Amino Acid Position:
535

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1.1
71
40.9
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
78.1
0.63
1
72.6
42.4
Minor 5ss
37.1
-1.5
2.8
43.2
43.8
Minor BPS
71.1
0.64
1.6
79.69
34.3

Associated Gene:

Gene:
BARD1
Ensembl Gene ID:
ENSAPLG00000015564
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016244
8268772 - 8311536
42765