About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_8290770_8291461_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8290770 - 8291461
Intron Length:
692

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
CTTCCCCTCCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTTAC
U12 Branch Point Sequence:
CTTTCCTTACTG
Flanking Amino Acid:
VKDNAGWTPLHEACNHGHKE
Intron Amino Acid Position:
478

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.9
76.6
34.9
Major BPS
68.9
0.47
1
59.6
38.6
Major PPT
73.7
0.53
0.7
65.8
30.2
Minor 5ss
36.6
-1.5
2.9
46.4
44.2
Minor BPS
67.3
0.4
1.7
70.75
43.1

Associated Gene:

Gene:
BARD1
Ensembl Gene ID:
ENSAPLG00000015564
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016244
8268772 - 8311536
42765