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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_8307969_8311225_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8307969 - 8311225
Intron Length:
3257

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTGAGTAGC
5'SS Class:
major
3'SS Sequence:
TTTTGACTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TACTTTTTGACT
Flanking Amino Acid:
SLGRCEHVFCLSCVGDCVGA
Intron Amino Acid Position:
71

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.3
0.48
1.1
65.6
40.2
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
85.3
0.79
0.8
82.1
34.6
Minor 5ss
33.5
-1.9
2.8
46.7
41.7
Minor BPS
69.8
0.7
1.2
78.91
37.7

Associated Gene:

Gene:
BARD1
Ensembl Gene ID:
ENSAPLG00000015564
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016244
8268772 - 8311536
42765