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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_831071_840068_F

Intron Information:

Intron Rank:
137783
Intron Class:
major
Intron Phase:
Intron Coordinates:
831071 - 840068
Intron Length:
8998

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGTTAG
5'SS Class:
strong_major
3'SS Sequence:
TTCTGCTCTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TGTTTCTGATCC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
75.1
37.7
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
78.6
0.64
0.8
73.7
31.4
Minor 5ss
38.5
-1.3
3
48.8
47.4
Minor BPS
59
0.26
1.7
71.83
39.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024201
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040322
830618 - 840628
10011