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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_8326410_8326862_R

Intron Information:

Intron Rank:
42
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8326410 - 8326862
Intron Length:
453

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTCCCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
ACTGTGTTAATT
Flanking Amino Acid:
CIGSLQHIKSRFGRGFTVKM
Intron Amino Acid Position:
2049

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
1.2
83.2
30.8
Major BPS
84.4
0.85
1
84
34.5
Major PPT
77
0.61
0.7
70.1
30.9
Minor 5ss
30.5
-2.2
2.5
33.7
41.5
Minor BPS
49.8
0.07
2.1
68.91
43

Associated Gene:

Gene:
ABCA12
Ensembl Gene ID:
ENSAPLG00000014859
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015556
8324130 - 8405805
81676