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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_8326956_8327226_R

Intron Information:

Intron Rank:
41
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8326956 - 8327226
Intron Length:
271

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGGTG
5'SS Class:
major
3'SS Sequence:
GTTGTTTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
TTCTTGATGACT
Flanking Amino Acid:
NKCSVILTSHSMEECEALCT
Intron Amino Acid Position:
2018

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
68.1
40.5
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
87
0.83
0.8
84.6
36
Minor 5ss
31.4
-2.1
3.9
45.4
49.7
Minor BPS
48.4
-0
2.3
75.33
41.8

Associated Gene:

Gene:
ABCA12
Ensembl Gene ID:
ENSAPLG00000014859
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015556
8324130 - 8405805
81676